To use this docker, you will have to mount AnnotSV installation directory ('bin' should be in that directory) to /ANNOTSV/, like in the example.
In Kant:
cd /data/john/tasks/2021/testAnnotSV/tmp;
docker run -v /nas/Jannah/software/Annotation/AnnotSV_2.2/AnnotSV/:/ANNOTSV/ -v `pwd`:/data/ genieusgenomics/annotsv AnnotSV -SVinputFile /data/test.bed -SVminSize 20 -reciprocal yes -genomeBuild GRCh38 -outputFile /data/test.AnnotSV.out5.tsv -overwrite
Content type
Image
Digest
Size
68.1 MB
Last updated
over 5 years ago
docker pull genieusgenomics/annotsv