A Novel Approach for Validation and Completeness of Protein Orthologous Groups
915
KusakiDB is a database of protein orthologous groups (OGs) that:
-- Provides an assessment and management tool for comparison of OGs at a family level in 117 plant species with whole genomes;
-- Correlates the information of three important databases, OrthoDB, UniProt and RefSeq, which increases the number of species;
-- Introduces a validation tag that is based on the existence of at least one protein (or transcript) in each OG.
How to install (copy and paste the following command lines)
docker pull ghelfi/kusakidb:latest
docker pull ghelfi/hayai_annotation_v2:latest
docker pull ghelfi/plantgenomics:latest
docker pull ghelfi/data:latest
# Create a volumes using ghelfi/data container
docker run -it --name volumes -v database:/usr/local/src/app/database -v data_main:/usr/local/src/app/data_main -v data_kusa:/usr/local/src/app/data_kusa -v data_layers:/usr/local/src/app/data_layers ghelfi/data:latest
# create kusanet2
docker network create kusanet2
# Deploy Plant Genomics: update number of threads (cpus), memory and memory-swap according with your PC specifications
docker run --name plantgenomics -d -v /var/run/docker.sock:/var/run/docker.sock --net kusanet2 -p 8080:8080 --cpus="10" --memory="40g" --memory-swap="100g" ghelfi/plantgenomics
License
Kusakidb is licensed under the MIT license.
Content type
Image
Digest
Size
302.9 MB
Last updated
almost 6 years ago
docker pull ghelfi/kusakidb