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gjhunt/dtangle

By gjhunt

•Updated almost 8 years ago

dtangle cell type deconvolution from genomics data

Image
0

1.2K

gjhunt/dtangle repository overview

⁠dtangle

⁠cell type deconvolution from genomics data

This docker image reproduces analysis described in our dtangle paper. There are several ways one can use this:

  1. re-make plots and copy to current directory (takes ~5 minutes to run)
docker run -it --rm --mount type=bind,source=$(pwd),destination=/output/ gjhunt/dtangle make plots
  1. re-do all analysis and plots and copy to current directory (takes about ~1 day to run)
docker run -it --rm --mount type=bind,source=$(pwd),destination=/output/ gjhunt/dtangle make analysis
  1. to copy all files to current working directory without re-running analyses
docker run --name dtangle-tmp gjhunt/dtangle /bin/true

docker cp dtangle-tmp:dtangle_analysis .

docker cp dtangle-tmp:dtangle_0.3.1.tar.gz .

docker cp dtangle-tmp:dtangle.data_0.3.5.tar.gz .

docker cp dtangle-tmp:makefile .

docker rm -v dtangle-tmp

Tag summary

Content type

Image

Digest

Size

1.5 GB

Last updated

almost 8 years ago

docker pull gjhunt/dtangle