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gjhunt/hybriddeconv

By gjhunt

•Updated over 6 years ago

Reproducible analysis for hybrid deconvolution of genomic data.

Image
0

1.3K

gjhunt/hybriddeconv repository overview

⁠re-make simulation plots and copy to current directory (takes ~5 minutes to run)

docker run -it --rm --mount type=bind,source=$(pwd),destination=/output/ gjhunt/hybriddeconv make sim_plots

⁠re-make real data plots and copy to current directory (takes ~5 minutes to run)

docker run -it --rm --mount type=bind,source=$(pwd),destination=/output/ gjhunt/hybriddeconv make data_plots

⁠re-make all simulation analysis and plots and copy to current directory (takes about ~1 day to run)

docker run -it --rm --mount type=bind,source=$(pwd),destination=/output/ gjhunt/hybriddeconv make sim_analysis

⁠re-make all real data analysis and plots and copy to current directory (takes about ~1 day to run)

docker run -it --rm --mount type=bind,source=$(pwd),destination=/output/ gjhunt/hybriddeconv make data_analysis

⁠to copy all files to current working directory without re-running

docker run --name hd-tmp gjhunt/hybriddeconv /bin/true

docker cp hd-tmp:dtangle2_analysis .

docker cp hd-tmp:dtangle2_comparison .

docker cp hd-tmp:dtangle.data_0.3.6.tar.gz .

docker cp hd-tmp:makefile .

docker rm -v hd-tmp

Tag summary

Content type

Image

Digest

Size

1.7 GB

Last updated

over 6 years ago

docker pull gjhunt/hybriddeconv