A image that contains fastqc, fastp, trim_galore, cutadapt and trimmomatic
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User can use the trimmer easily by one line command like:
# to show the help info
docker run fastq-trimmer trim_galore --help
# to trim the adapter sequences
trim_galore -q 20 --length 30 --paired sample_R1.fq.gz sample_R2.fq.gz --gzip -o path/to/output/directory
For other trimmer
# to show the help info
docker run fastq-trimmer fastqc --help
# to show the help info
docker run fastq-trimmer fastp --help
# to show the help info
docker run fastq-trimmer cutadapt --help
# to show the help info
docker run fastq-trimmer trimmomatic --help
Content type
Image
Digest
sha256:bc9448bb2…
Size
202.8 MB
Last updated
over 3 years ago
docker pull goushixue/fastq-trimmer