granek/aimhii repository overview

:CONFIG: #+TODO: TODO WORKING DRAFT | DONE #+DRAWERS: HIDDEN PROPERTIES STATE NOTES CONFIG #+STARTUP: indent showall #+TAGS:noexport(n) #+OPTIONS: H:2 #+OPTIONS: toc:nil #+OPTIONS: num:nil #+OPTIONS: skip:nil #+OPTIONS: todo:nil #+OPTIONS: author:t #+OPTIONS: dated:nil #+OPTIONS: tags:nil #+OPTIONS: ^:nil #+TITLE:AIM-HII :END:

There are several different ways to install AIM-HII:

1. [[docker_install_aimhii.org][Docker]]: recommended for a standard desktop
2. [[pip_install_aimhii.org][Pip]]: recommended for a bioinformatics server
3. [[git_install_aimhii.org][Git]]: recommended for pros

The bioinformatics software that AIM-HII depends on is described in the [[software_dependencies.org][Software Dependencies]] section.

For details about the input files to AIM-HII, and options see [[running_aimhii.org][Running AIMHII]]. There are some differences specific to running from Docker that are discussed in /Quick Start to analyze your own data/ section of the [[docker_install_aimhii.org][Docker Installation Instructions]].

Note that in the instructions, text that has this formatting should be typed at the command line.