greatfireball/ime_rcorrector repository overview

⁠ime_rcorrector

Docker image for the Rcorrector RNA-seq correction pipeline

⁠Prerequisities

In order to run this container you'll need docker installed.

• Windows⁠
• OS X⁠
• Linux⁠

⁠Usage

The docker image provides the Rcorrector⁠ tool. It will run the run_rcorrector.pl command as entrypoint. Therefore, running a container is as easy as:

docker run --rm greatfireball/ime_rcorrector --version

Just provide all required parameters via command line. Default working directory is /data. Therefore, input data should be mounted using /data volume.

Running the the example command from the README.md⁠:

docker run --user $(id -u):$(id -g) --rm -v $PWD:/data greatfireball/ime_rcorrector -1 /opt/rcorrector/Sample/sample_read1.fq -2 /opt/rcorrector/Sample/sample_read2.fq

⁠Releases

The master branch contains a rolling release. The develop branch is used for further development. Specific tags are used for different Rcorrector releases. Latest release is .

Version/Branch	Commit in Docker Repo	Image

⁠Contributing

Please read CONTRIBUTING.md⁠ for details on our code of conduct, and the process for submitting pull requests to us.

⁠Author

• Frank Förster - Initial work - greatfireball⁠

See also the list of contributors⁠ who participated in this project.

⁠License

This project is licensed under the MIT License - see the LICENSE.md⁠ file for details.