greatfireball/ime_spades repository overview

⁠ime_spades

Docker container for SPAdes assembler

⁠Usage

The docker image runs spades.py as entry point and --test as command. Therefore, if running the container, the test assembly will be performed.

docker run --rm greatfireball/ime_spades --version

Just provide all required parameters via command line. Default working directory is /data. Therefore, input data should be mounted using /data volume.

⁠Releases

The master branch contains a rolling release. Specific tags are used for different SPAdes release.

⁠master

⁠develop

⁠release 3.13.0

⁠release 3.12.0

⁠release 3.11.1

⁠release 3.11.0

⁠release 3.10.1