grecolab/cpgmotifs repository overview

A user-friendly graphical interface that allows searching and visualising motifs linked to CpG sites from differential methylation analyses. The tool is implemented as a R-Shiny application called cpgmotifs and the source code is available at https://github.com/grecolab/DNA-signatures-of-CpG-methylation⁠ .

Pull the cpgmotifs docker image:

  $ docker pull grecolab/cpgmotifs

Run the cpgmotifs docker image, map http port 3838 on the host port 8787:

  $ docker run --rm -p 8787:3838 grecolab/cpgmotifs

Using cpgmotifs:

  Open your browser and visit (if you choose to map to other port replace 8787 in the url with the correct one): http://localhost:8787

CpGmotifs welcome page should be now available.