griffithlab/regtools-cwl repository overview

⁠regtools-cwl

cwl workflow for running regtools

⁠toil command

cd ./regtools-cwl/gdc_client/ cwltool --outdir /Users/zskidmor/Desktop/cwl_test workflow.cwl run.yml

⁠notes

Note that the run.yml file specifies the inputs for the workflow, these inputs are from the test data for regtools and can be obtained after cloning the regtools repo⁠