hammerlab/biokepi-run repository overview

⁠Biokepi-friendly Ubuntu Container

This Dockerfile provides a fresh Ubuntu machine with the few dependencies that Biokepi workflows require (Bioinformatics tools are, by default, installed by the Biokepi workflows).

• cmake is required by tools like Kallisto (cf. issue solvuu/biopam#27⁠).
• r-base is for Seq2HLA
• tcsh and gawk are for NetMHC (issue hammerlab/biokepi#287⁠)
• libx11-dev, libfreetype6-dev, and pkg-config are dependencies of Matplotlib which is used by Python tools (topiary, vaxrank, …).
• git is used to install tools from git repositories.