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hammerlab/mhcflurry-cloud

By hammerlab

Updated about 10 years ago

MHCflurry model selection on google container engine

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hammerlab/mhcflurry-cloud repository overview

mhcflurry-cloud

This module provides joblib-enabled routines to train and test MHCflurry models.

Python 3.4 only (when running with multiprocessing)

When using the multiprocessing backend for joblib (the default), the 'fork' mode causes a library we use to hang. We have to instead use the 'spawn' or 'forkserver' modes. See this note for more information.

Running locally

Install the package and run tests. From the repo directory:

$ pip install -e .
$ nosetests .

Then try running the example notebook.

Running on google cloud

TODO

Tag summary

Content type

Image

Digest

Size

803.6 MB

Last updated

about 10 years ago

docker pull hammerlab/mhcflurry-cloud