ibiomcnr/prepare-input-reference-files repository overview

⁠Prepare primer input inference

The tool create primer input inference file for mopo16s tool.

⁠Galaxy usage

To run the tool using ITSoneWB wrapper:

1. Select the taxon name in the tool menu:

2. Submit your request:

3. The output can be esily reproduced from the history or downloaded.

4. If no output is crated, an error will be displayed:

⁠Command line usage

To run the tool using the prepare_input_file2primer_inference.py script:

python prepare_input_file2primer_inference.py -t Aspergillus -f ITS1_r131_plus_flanking_region.fna.gz -p node2tax_name_path.tsv.gz -o output.fa

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