iguigon/mirkwood_base repository overview

This image contains all external dependencies that are not provided with miRkwood.
miRkwood image is build based on this image.

• Perl modules
  Config::Simple
  YAML::XS
  File::Which
  Mime:Lite
  Image::Size
  File::Type
  File::Slurp
  Archive::Zip
  LWP::UserAgent
  Bio::DB::Fasta
  Inline::CPP
  Log::Message::Simple

• Others

  • bedtools (v2.17.0)
  • blast+ (v2.2.28+)
  • VARNA (v3-91)
  • tRNAscan-SE (v1.3.1)