imegusu/homer_chipseq2 repository overview

⁠Reference data

genome : mm10, hg19, hg38, dm6
promoter : mouse, human, fly

⁠Usage

$ mkdir /path/to/homer_result
$ mkdir /path/to/homer_tmp

$ docker run -it --rm -v /path/to/myPATH:/home/work imegusu/homer_chipseq2 findMotifsGenome.pl /home/work/sample_summits.bed mm10 /home/work/homer_result -size 200 -mask -preparsedDir /home/work/homer_tmp