imegusu/rstudio_chipseq repository overview

⁠Main packages

"ChIPseeker"
"ChIPpeakAnno"
"org.Mm.eg.db"
"org.Hs.eg.db"
"org.Dm.eg.db"
"TxDb.Mmusculus.UCSC.mm10.knownGene"
"TxDb.Mmusculus.UCSC.mm39.knownGene"
"TxDb.Hsapiens.UCSC.hg19.knownGene"
"TxDb.Hsapiens.UCSC.hg38.knownGene"
"TxDb.Dmelanogaster.UCSC.dm6.ensGene"
"TxDb.Mmusculus.UCSC.mm10.ensGene"
"TxDb.Hsapiens.UCSC.hg38.refGene"
"BSgenome.Mmusculus.UCSC.mm10"
"BSgenome.Mmusculus.UCSC.mm39"
"BSgenome.Hsapiens.UCSC.hg19"
"BSgenome.Hsapiens.UCSC.hg38"
"BSgenome.Dmelanogaster.UCSC.dm6"
"clusterProfiler"
"msigdbr"
"biomaRt"
"VennDiagram"
"tidyverse"
"DiffBind"

⁠Usage

$ docker run -it --rm -e PASSWORD=xxxx -p 8787:8787 -v /path/to/myPATH:/home/rstudio imegusu/rstudio_chipseq:tagname

Open Browser URL "http://localhost:8787⁠"