imetools/trimgalore repository overview

$ docker run --rm -it imetools/trimgalore:v0.4.5
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###    USAGE:
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###   trim_galore [options] <filename(s)>
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###
###   -h/--help               Print this help message and exits.
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###   -v/--version            Print the version information and exits.
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###   -q/--quality <INT>      Trim low-quality ends from reads in addition to adapter removal. For
###                           RRBS samples, quality trimming will be performed first, and adapter
###                           trimming is carried in a second round. Other files are quality and adapter
###                           trimmed in a single pass. The algorithm is the same as the one used by BWA
###                           (Subtract INT from all qualities; compute partial sums from all indices
###                           to the end of the sequence; cut sequence at the index at which the sum is
###                           minimal). Default Phred score: 20.
###
###   --phred33               Instructs Cutadapt to use ASCII+33 quality scores as Phred scores
###                           (Sanger/Illumina 1.9+ encoding) for quality trimming. Default: ON.
[...]

$ docker run --rm -it imetools/trimgalore:v0.4.5 --version
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###                             Quality-/Adapter-/RRBS-Trimming
###                                  (powered by Cutadapt)
###                                     version 0.4.4_dev
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###                                Last update: 24 03 2017
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