imperialgenomicsfacility/guihivedockerimage repository overview

⁠A docker image for running guiHive server

An ubuntu 16.04 based docker image containing the compiled guiHive⁠ server.

⁠Pull Docker image

docker pull imperialgenomicsfacility/guihivedockerimage

⁠Run server

USER: vmuser

Access guihive: http://HOST_IP_ADDRESS:8080

⁠Connect to MySQL Hive db

MySQL server should be visible to the docker host

docker run -p8080:8080 --net=host imperialgenomicsfacility/guihivedockerimage /home/vmuser/guiHive/server/server

⁠Connect to SQLite database

A remote directory location containing the sqlite database files can be mounted in the docker container

• Run the docker image in interactive mode docker run -p8080:8080 -it --net=host --privileged imperialgenomicsfacility/guihivedockerimage /bin/bash

• Create a directory under $HOME mkdir -p ~/hive_sqlite_db_dir

• Mount remote directory sshfs -o uid=1000,gid=100 remote user@remote_serevr:/path/sqlite_db/ /home/vmuser/hive_sqlite_db_dir/

• Run GuiHive server /home/vmuser/guiHive/server/server

Use path of mounted directory as the sqlite url for the guihive, e.g."sqlite:////home/vmuser/hive_sqlite_db_dir/test_sqlite_hive.db"