infotechsoft/metaphlan2 repository overview

⁠docker-metaphlan2 2.7.8

MetaPhlAn⁠ docker image based on Miniconda3⁠

⁠MetaPhlAn 2: Metagenomic Phylogenetic Analysis

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.

⁠Base Image

• Conda⁠ conda/miniconda2-centos7

⁠Installed

• MetaPhlAn (2.7.8)

⁠Settings

VOLUME /data/
WORKDIR /data/

⁠Running

docker run -it -v $(pwd):/data infotechsoft/metaphlan2 bash
# metaphlan2.py metagenome.fastq --input_type fastq > profiled_metagenome.txt

⁠Maintainer

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