infotechsoft/picrust repository overview

⁠docker-picrust v1.1.4

PICRUSt⁠ docker image based on Miniconda2⁠

PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States

PICRUSt (pronounced “pie crust”) is a bioinformatics software package designed to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes.

⁠Base Image

• Conda⁠ conda/miniconda2-centos7

⁠Installed

• PICRUSt (1.1.4)

⁠Settings

VOLUME /data/
WORKDIR /data/

⁠Running

docker run -it -v $(pwd):/data infotechsoft/picrust bash
# normalize_by_copy_number.py \
    -i your_otu_table.biom \
    -o normalized_otus.biom

⁠Maintainer

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