intelhlsgenomicsdb/vcf_combiner repository overview

A usage example:

docker run -it -v $HOME/docker/data/:/data/ -v /data/variant_calling/reference/:/ref/ vcf_combiner combine_vcf -R /ref/Homo_sapiens_assembly19.fasta -o /data/output/combined_vcf.gz -i /data/tn.list

where:

1. reference file Homo_sapiens.fasta is resided at host directory '/data/variant_calling/reference/'.
2. $HOME/docker/data/tn.list is a VCF file list.
3. the combined VCF file will saved at $HOME/docker/data/output/combined_vcf.gz