ishahakm/aussie repository overview

⁠Aussie

A docker image for Single-Cell RNA and Spatial transcriptomic analysis

⁠0. Change Log

See Change Log⁠

⁠1. Included tools

• Base Image: nvidia/cuda:12.1.0-base-ubuntu22.04
• Languages: Python, R, Julia
• scRNAseq Analysis Pipelines: Seurat, Scanpy
• Spatial Transcriptomics: CellCharter, CellScopes, Tangram
• Cell-type annotation: SingleR, VoxHunt
• GSEA: fgsea
• GRN Analysis: SCENIC
• CNA: inferCNV