jandot/tda repository overview

Docker image for running Topological Data Analysis, using Daniel Muellner's python mapper⁠.

To use: docker run -d -v $(pwd):/work jandot/tda

As this image opens a GUI, you'll need to connect the display from the docker container to your Mac or Windows. To get this running on Mac:

• socat TCP-LISTEN:6000,reuseaddr,fork UNIX-CLIENT:\"$DISPLAY\"
• Start XQuartz
• docker run -d -v $(pwd):/work -e DISPLAY=192.168.99.1:0 jandot/tda

Note: The IP number used here should not be the one reported with docker-machine ip default (often 192.168.99.100), but the one that is reported under vboxnet0 when running ifconfig.

To visualize with D3⁠, generate the standalone script from the mapper GUI (from the File menu), and add the following at the end:

G = mapper_output.to_d3js_graph()
import json
with open('mapper.json', 'wb') as f:
    json.dump(G, f)