jcuhpc/abyss repository overview

A de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Contents of Dockerfile:

FROM ubuntu:18.04 MAINTAINER [email protected]⁠

ENV PACKAGES abyss

ENV ABYSS_VERSION 2.0.2

WORKDIR /home

RUN apt-get update &&
apt-get upgrade -y &&
useradd -ms /bin/bash luser &&
apt-get install -y ${PACKAGES} &&
apt-get clean

USER luser WORKDIR /home/luser ENV PATH "$PATH:/usr/lib/abyss"