jcuhpc/samtools repository overview

Tools for reading/writing/editing/indexing/viewing SAM/BAM/CRAM format. Contents of Dockerfile:

FROM ubuntu:18.04 MAINTAINER [email protected]⁠

ENV PACKAGES samtools samtools-test

ENV SAMTOOLS_VERSION 1.7

WORKDIR /home

RUN apt-get update &&
apt-get upgrade -y &&
useradd -ms /bin/bash luser &&
printf "#!/bin/bash\nexport DEBIAN_FRONTEND=noninteractive\napt-get install -y tzdata\nln -fs /usr/share/zoneinfo/Australia/Brisbane /etc/localtime\ndpkg-reconfigure --frontend noninteractive tzdata\n" >tzinst && chmod 700 tzinst && ./tzinst && rm -f tzinst &&
apt-get install -y ${PACKAGES} &&
apt-get clean

USER luser WORKDIR /home/luser