jcuhpc/structure repository overview

A free software package for using multi-locus genotype data to investigate population structure. Contents of Dockerfile:

FROM ubuntu:18.04 MAINTAINER [email protected]⁠

ENV PACKAGES gcc g++ make wget

ENV STRUCTURE_VERSION 2.3.4

WORKDIR /home

RUN apt-get update &&
apt-get upgrade -y &&
useradd -ms /bin/bash luser &&
printf "#!/bin/bash\nexport DEBIAN_FRONTEND=noninteractive\napt-get install -y tzdata\nln -fs /usr/share/zoneinfo/Australia/Brisbane /etc/localtime\ndpkg-reconfigure --frontend noninteractive tzdata\n" >tzinst && chmod 700 tzinst && ./tzinst && rm -f tzinst &&
apt-get install -y ${PACKAGES} &&
cd /usr/local && wget https://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz⁠ && tar xf structure_kernel_source.tar.gz &&
rm -f *.tar.gz && mv structure_kernel_src structure && cd structure && make &&
apt-get clean

USER luser WORKDIR /home/luser ENV PATH "$PATH:/usr/local/structure"