jedwardswustl/blissnp repository overview

software from: https://github.com/BiCroLab/blissNP⁠

bedtoolsand bwa are in /opt/conda/bin

scan_for_matches is in /opt/scan_for_matches/

samtools is in /opt/samtools-1.9

blissnp is at /opt/blissNP

Due to configuration changes needed to run, I recommend copying the blissNP software elsewhere and edit the configuration there. You should only have to do this once.

To use this image you need to do add the following to your path:

export PATH=$PATH:/opt/conda/bin/:/opt/samtools-1.9/:/opt/scan_for_matches/

export BLISS_PATH=/bin