jibinjv/flames repository overview

For GWAS gene prioritization https://github.com/Marijn-Schipper/FLAMES⁠

docker run -it jibinjv/flames:v1.1.2 bcftools

docker run -it jibinjv/flames:v1.1.2 bedtools

docker run -it jibinjv/flames:v1.1.2 samtools

docker run -it jibinjv/flames:v1.1.2 plink2

docker run -it jibinjv/flames:v1.1.2 plink

docker run -it jibinjv/flames:v1.1.2 magma

docker run -it jibinjv/flames:v1.1.2 /opt/miniconda/envs/FLAMES/bin/python3 /FLAMES/FLAMES.py FLAMES --help

docker run -it jibinjv/flames:v1.1.2 /opt/miniconda/envs/FLAMES/bin/python3 /pops/pops.py --help

docker run -it jibinjv/flames:v1.1.2 /opt/miniconda/envs/cafeh/bin/python /software/cafeh/cafeh.py --help

docker run -it jibinjv/flames:v1.1.2 /software/caviarbf/caviarbf

docker run -it jibinjv/flames:v1.1.2 /usr/bin/finemap_v1.4.2_x86_64

docker run -it jibinjv/flames:v1.1.2 /usr/bin/CAVIAR --help

docker run -it jibinjv/flames:v1.1.2 /usr/bin/eCAVIAR --help

docker run -it jibinjv/flames:v1.1.2 /software/MsCAVIAR/MsCAVIAR -h

docker run -it jibinjv/flames:v1.1.2 /opt/miniconda/envs/FLAMES/bin/python3 /software/fine-mapping-inf/run_fine_mapping.py --help

docker run -it jibinjv/flames:v1.1.2 SuSiEx --help

docker run -it jibinjv/flames:v1.1.2 /opt/miniconda/envs/cafeh/bin/python sparsepro_zld.py -h

docker run -it --user $(id -u):$(id -g) -v /mnt/disks/sdd/:/mnt/disks/sdd/ jibinjv/flames:v1.1.2
Rscript /mnt/disks/sdd/mr_analysis_neuropsy_gpc_clusters/gpca_clusters/Grch37/FLAMES_Based_Analysis/flames_analysis_comand.R --help