This repo contains a spiffy new docker container capable of running a Bioconductor base image of rstudio-server with mia and miaviz pre-installed and tailored for microbiome analyses!
In addition to all the stuff that the good folks at Bioconductor preinstalled into rstudio base image, we have pre-installed the following packages: \
mia miaviz \
Simply launch the docker container and expose the port so you can enter it from a web browser by typing in the following commmand:
docker run \ -e PASSWORD=bioc \ -p 8787:8787 \ jochum00/mia:1.0
This command will run the docker container jochum00/mia:1.0 on your local machine.
Bioconductor base containers fix the username to always being rstudio. and the password in the above command is given as bioc but it can be set to anything.
8787 is the port being mapped between the docker container and your host machine. NOTE: password cannot be rstudio.
The user is logged into the rstudio user by default.
Additional information regarding the use of bioconductor docker container based rstudio images can be found here