A docker image for running SQANTI3
There are two main Python scripts in SQANTI3: sqanti3_qc.py and sqanti3_RulesFilter.py. They can be run in the image as follows:
# Using the most recent version
docker run --rm joelnitta/sqanti3:latest sqanti3_qc.py --help
# Using a specific version of SQANTI3
docker run --rm joelnitta/sqanti3:1.6.0 sqanti3_qc.py --help
# Using the most recent version
docker run --rm joelnitta/sqanti3:latest sqanti3_RulesFilter.py --help
# Using a specific version of SQANTI3
docker run --rm joelnitta/sqanti3:1.6.0 sqanti3_RulesFilter.py --help
Content type
Image
Digest
sha256:cc38cbbc0…
Size
1.6 GB
Last updated
over 3 years ago
docker pull joelnitta/sqanti3