johnyaku/hitmap repository overview

⁠hitmap

Files for containerisation of mashuoa/hitmap

There are two dockerfiles:

1. Dockerfile_base is built from rocker/r-base:4.0.4 and installs all of the system libraries in system_libraries.txt (and then cleans up)

2. Dockerfile_full is built from 1) and installs mashuoa/hitmap via install.R

Once the installation is tested, the idea is to replace install.R by install_from_renv.R. This alternative installation script simply restores the R environment snapshotted by renv.lock. (Note that the current version of renv.lock is not test, and may have problems.)

The other two files (analysis.R and config.yml) are added for convenience. TODO: document the usage of these files.