kdgosik/demuxlet repository overview

FROM ubuntu MAINTAINER Kirk Gosik [email protected]⁠

#some basic tools RUN apt-get update -y && apt-get install -y --no-install-recommends
autotools-dev
automake
autoconf
build-essential
bzip2
ca-certificates
curl
csh
emacs
emacs-goodies-el
g++
gawk
git
grep
less
libbz2-dev
liblzma-dev
libcurl4-openssl-dev
libpng-dev
librsvg2-bin
libssl-dev
libtool-bin
libxml2-dev
lsof
make
man
ncurses-dev
openssh-client
pkg-config
tabix
unzip
wget
zip
zlib1g-dev

######### #HTSlib # ######### ENV HTSLIB_INSTALL_DIR=/opt/htslib

WORKDIR /tmp RUN git clone https://github.com/samtools/htslib.git⁠ &&
cd /tmp/htslib &&
make &&
make install

############

⁠Demuxlet

############ ENV DEMUXLET_INSTALL_DIR=/opt/demuxlet

WORKDIR /tmp

RUN git clone https://github.com/statgen/demuxlet.git⁠ &&
cd /tmp/demuxlet &&
autoreconf -vfi &&
./configure &&
make &&
make install

WORKDIR /