kekemook/rnbeads repository overview

⁠Installation process

docker pull r-base:latest docker run -it r-base:latest bash

BiocManager::install("RnBeads")

apt-get update apt-get install -y ghostscript apt-get install -y libcurl4-openssl-dev
apt-get install -y libxml2-dev
apt-get install -y libfontconfig1-dev apt-get install libharfbuzz-dev libfribidi-dev apt-get install libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev

BiocManager::install("IlluminaHumanMethylationEPICv2anno.20a1.hg38") BiocManager::install("sesame") install.packages("RPMM")

install mamba create environment named "analysis" and activate it. mamba install jupyter

install.packages("IRkernel")

BiocManager::install("FlowSorted.Blood.EPIC")

BiocManager::install(IlluminaHumanMethylationEPICanno.ilm10b4.hg19)