kheffah/ctme repository overview

⁠cTME

Computational pipelines for analysis of Tumor MicroEnvironment (cTME)

General functionality willl be added to the HistomicsTK package, whereas specific functionality to this project will be added to this repo.

⁠Basics

1. Clone repo: git clone https://github.com/CancerDataScience/cTME
2. Initialize submodules: git submodule update --init --recursive

⁠Submodules

See: https://git-scm.com/book/en/v2/Git-Tools-Submodules⁠

⁠Docker

Read the comment at the top of Dockerfile