khench/d_cns repository overview

⁠Container repository for d_cns

This container is meant as a support of the msa_pipeline⁠ by the Buckler lab and to be used for repeat maksing of genome with KMER prior to the genome alignments. For the initial building setup, please refer to the accompanying github repository d_cns_build⁠.

It includes the manually installed program dCNS by Song et al 2020 and version of KAT (Mapleson et al 2016) pulled from conda.

⁠usage

To use the container, run for example:

podman run docker.io/khench/d_cns:v0 dCNS