knoweng/samples_clustering_pipeline repository overview

⁠Building The Samples Clustering Pipeline Docker Image

The Dockefile in this directory contains all the commands, in order, needed to build the Samples Clustering Pipeline docker image.

• Run the "make" command to build the Samples Clustering Pipeline docker image (output: docker image called "samples_clustering_pipeline" and a tag with today's date and time):

    make build_docker_image

• Login to docker hub. When prompted, enter your password and press enter:

    make login_to_dockerhub username=(enter your docker login here) email=(enter your email here)

• Upload your image to docker hub:

    make push_to_dockerhub

⁠How to run this docker image

⁠1. Run the following command with the specified docker image:

docker run -v `pwd`:/home/test/run_dir/ -it knowengdev/samples_clustering_pipeline:07_26_2017

⁠2. Change directory to the "test" directory

cd test

⁠3. Create the local directory "run_dir" and place all the run files in it

make env_setup

⁠4. Run the Samples Clustering Pipeline

make run_cc_net_nmf