koki/reductdims repository overview

source("reductDims.R")

input <- read.csv("YOUR_CSV_FILE")
out <- reductDims(
	input = input # User's CSV file
	dim_pca = 10, # Dimension of PCA
	dim_tsne = 2, # Dimension of t-SNE
	type_pca = "svd", # Type of PCA
	verbose = TRUE # verbose-mode
	)
plotDims(out)

Rscript cmd_reductDims.R \
[YOUR_CSV_FILE] \
[Dimension of PCA] \
[Dimension of t-SNE] \
[Type of PCA] \
[verbose-mode] \
[Output file 1 (.RData)] \
[Output file 2 (.png)]