kordk/torch-ecpg repository overview

This repository provides Docker images to ease the usage of the Torch-eCpG tool (https://github.com/kordk/torch-ecpg⁠).

Torch-eCpG is a GPU enabled expression quantitative trait methylation (eQTM) mapper to identify expression associated CpG (eCpG) loci with python CLI using pytorch.

If you use Torch-eCpG in your research, please cite the following paper: Kober, K.M., Berger, L., Roy, R. et al. Torch-eCpG: a fast and scalable eQTM mapper for thousands of molecular phenotypes with graphical processing units. BMC Bioinformatics 25, 71 (2024). https://doi.org/10.1186/s12859-024-05670-4⁠