kozo2/mseap repository overview
MSEAp
An R package to perform Metabolite Set Enrichment Analysis (MSEA) for metabolomics community.
Installation (for the users)
# If you are using Debian or Ubuntu, please uncomment the next two lines
#system("sudo apt-get update")
#system("sudo apt-get install -y zlib1g-dev libxml2-dev libpng-dev")
install.packages("devtools")
source("http://bioconductor.org/biocLite.R")
biocLite(c("KEGGREST", "KEGGgraph"))
library(devtools)
install_github("afukushima/MSEAp")
Prerequisite packages for the developers
# If you are using Debian or Ubuntu, please uncomment the next two lines
#system("sudo apt-get update")
#system("sudo apt-get install -y zlib1g-dev libxml2-dev libpng-dev libcairo2-dev")
install.packages(c("devtools", "testthat", "fields", "ggplot2", "dplyr", "visNetwork", "roxygen2", "testthat", "knitr", "webshot", "rmarkdown"))
source("http://bioconductor.org/biocLite.R")
biocLite(c("KEGGREST", "KEGGgraph", "BiocStyle"))
Documents
browseVignettes("MSEAp")
Updates
version 0.0.9000 (Oct 17, 2017)
License
The MSEAp package is free software; a copy of the GNU General Public License, version 3, is available at http://www.r-project.org/Licenses/GPL-3
Tag summary
Content type
Image
Digest
Size
440.7 MB
Last updated
almost 9 years ago
docker pull kozo2/mseap