kyogesh/afsample2 repository overview

docker run --volume <path-to-databases>:/databases \
           --volume <path-to-inputs>:/inputs \
           --volume <path-to-outputs>:/outputs \
           -it kyogesh/afsample2:mark8 \
           --method afsample2     \
           --fasta_paths inputs/example.fasta     \
           --flagfile inputs/flagfile.flag     \
           --nstruct 4     \
           --msa_rand_fraction 0.20     \
           --model_preset=monomer     \
           --output_dir examples/

apptainer run --nv -B <path-to-databases>:/databases \
            -B <path-to-inputs>:/input \
            -B <path-to-outputs>:/output \
            <path-to-sif-image> \  \
            --method afsample2 \
            --fasta_paths inputs/example.fasta \
            --flagfile inputs/flagfile.flag \
            --nstruct 1 \
            --msa_rand_fraction 0.20 \
            --model_preset=monomer \
            --output_dir /output \