lappsgrid/jupyter-lsd-kernel repository overview

The LSD kernel expects the environment variables GALAXY_HOST and GALAXY_KEY to be available to be able to connect to a Galaxy server. The kernel saves notebooks to /home/jovyan (the Jupyter user) inside the Docker container so to persist notebooks mount a local volume as /home/jovyan, i.e. -v $HOME/notebooks:/home/jovyan

So a full start up might look something like:

HOST=http://galaxy.lappsgrid.org
KEY=1234567890DEADBEEF
ENV="-e GALAXY_HOST=$HOST -e GALAXY_KEY=$KEY"
VOLUME="-v $HOME/notebooks:/home/jovyan"
docker run -d -p 8888:8888 $ENV $VOLUME lappsgrid/jupyter-lsd-kernel