leetaerim/ivag repository overview

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⁠IVAG version2 is availabel at https://hub.docker.com/r/gyuheekim/ivag_v2⁠

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This docker image contains all required environment to run the app IVAG.

MANUAL

Basic documentation for running your app on Linux. To run the app on Windows, open cmd terminal and type the command lines below.

1. docker pull leetaerim/ivag:v1
2. docker run -ti -v YOUR_LOCAL_DIRECTORY_TO_MOUNT:/jbrowse/my_data -p 8080:80 -p 8383:3838 leetaerim/ivag:v1 /bin/bash -c "Rscript load.R"

• Make sure that your local directory to mount consists of a subdirectory called raw, json and plink
• When you want to share this web-interface with your team, add " -e HOST_IP='YOUR_IP_ADDRESS' " to docker run command

Then, you can start the app by typing this URL into your internet browser.

IVAG - RNAseq, GWAS, JBrowse : localhost:8383 IVAG - JBrowse : localhost:8080

• The construction of the genome browser should be done at localhost:8383
• when you typing this URL, you can type localhost IP instead of localhost.