lianov/rstudio_ggplot2 repository overview

⁠Overview

A container built for the demonstration of environment reproducibility with R using Docker for the UAB HPC User Session (December 2020). Built using rocker/rstudio base image (rocker/rstudio:3.6.3), an RStudio session can be launched containing dependencies for ggplot2.

The tutorial linked to this repository can be viewed at: https://gitlab.rc.uab.edu/circ_nbi_share/docker_with_r_user_session/intro_docker_rstudio_part1⁠

⁠Quickstart

To launch an RStudio session using the container:

docker run -d --rm -p 8787:8787 -e PASSWORD=NBI lianov/rstudio_ggplot2:3.6.3

(The password can be set to any string. The username is rstudio)

After the run command, visit localhost:8787 in your browser.

⁠Mounting:

The container has a directory /home/rstudio/data_mount which is ideal for mounting purposes to give access to the container for data or scripts present in your OS.

To mount your current working directory run:

docker run -d --rm -p 8787:8787 -e PASSWORD=NBI -v `pwd`:/home/rstudio/data_mount lianov/rstudio_ggplot2:3.6.3

Sample data and a script is available at /home/rstudio/data_plots

Contact: Lara Ianov, PhD - [email protected]⁠