lifeomic/termlink repository overview

⁠termlink

Prepare an ontology and send it to the Precision Health Cloud.

TermLink⁠ is a command line client and library for uploading ontologies to LifeOmic's Precision Health Cloud⁠. Its goal is to make uploading standardized ontologies easier and to provide utilities for uploading custom ontologies. It provides a simple command line interface for creating standard ontologies and a Python SDK for building integrations with custom ontologies.

⁠Quickstart

Download the following tools:

• Docker⁠

Pull the latest version of TermLink from Docker Hub⁠:

docker pull lifeomic/termlink

Run it.

docker run lifeomic/termlink --help

Import the output ontology into the Precision Health Cloud⁠ using the LifeOmic CLI⁠:

docker run lifeomic/termlink ... | lo ontologies import <project>