lincoln1010/mass_spectrometry_file_converter repository overview

Instructions on how to use this Image:

1. Pull the docker image: docker pull docker pull lincoln1010/mass_spectrometry_file_converter:v1.1

2. Run the container: docker run --privileged -d -ti --name < name of the container > -p 5000:5000 lincoln1010/mass_spectrometry_file_converter:v1.0

3. Enabling the docker in docker (which is necessary): docker exec < name of the container > dockerd >/tmp/docker.stdout 2>/tmp/docker.stderr &

4. Copy extra parameters on config.txt file: a : create a config.txt file with content , for example, --mzXML (without any indentation) b : docker cp < path to your config.txt file > < name of the container >:/app/config.txt

(copying the config.txt file to /app/config.txt inside the container)

1. The URL will be available on http://localhost:5000/api-docs#⁠ with RESTAPI

For more info about, how the format of input file, please refer the link: https://git.rwth-aachen.de/linsherpa/ms_converter⁠ Section MS-Converter Server