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linguopeng/kegg

By linguopeng

•Updated over 4 years ago

对蛋白序列进行KEGG注释,KEGG官方工具能够完成任何物种的KEGG注释

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0

188

linguopeng/kegg repository overview

参考https://mp.weixin.qq.com/s/35zVtU2pGOJoAsbguinvrQ,EggNOG-mapper对非模式物种注释结果仍然存在一个Gene⁠ ID对应多个KO Number的情况,KEGG官方提供KofamKOALA,注释结果中Gene ID对应唯一一个KO Number。 exec_annotation -o test.querry2KO --cpu 45 --format mapper -E 1e-5 test.pep.fa #help文档中的解释 -f, --format Format of the output [detail] detail: Detail for each hits (including hits below threshold) detail-tsv: Tab separeted values for detail format mapper: KEGG Mapper compatible format mapper-one-line: Similar to mapper, but all hit KOs are listed in one line

Tag summary

Content type

Image

Digest

Size

1.7 GB

Last updated

over 4 years ago

docker pull linguopeng/kegg