litd/docker-ac repository overview

Debian 11.4

python3 --version # Python 3.9.2

cutadapt --version # 3.2

macs2 --version # macs2 2.2.7.1

fastq-dump --version # "fastq-dump" version 2.10.9

fastqc --version # FastQC v0.11.9

preseq # Version: 2.0.3

bwa # Version: 0.7.17-r1188

samtools --version # samtools 1.11

bedtools --version # bedtools v2.30.0

methylQA # Version: 0.2.1 (r052)

java --version

#openjdk 11.0.15 2022-04-19

#OpenJDK Runtime Environment (build 11.0.15+10-post-Debian-1deb11u1)

#OpenJDK 64-Bit Server VM (build 11.0.15+10-post-Debian-1deb11u1, mixed mode, sharing)

perl --version # This is perl 5, version 32, subversion 1 (v5.32.1) built for x86_64-linux-gnu-thread-multi

java -jar /opt/HMMRATAC_V1.2.10_exe.jar # HMMRATAC Version: 1.2.10

java -jar /opt/ChromHMM/ChromHMM.jar Version # This is Version 1.23 of ChromHMM (c) Copyright 2008-2012

#bash /opt/SEACR-1.3/SEACR_1.3.sh

fseq # F-Seq Version 1.85

R --version # R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"