lkalbert001/kobas repository overview

⁠Source: http://kobas.cbi.pku.edu.cn/download.php⁠

⁠There are two part of data behind KOBAS:

• FASTA format protein sequence files of KO and all supported species. KOBAS sequence files download website: http://kobas.cbi.pku.edu.cn/site/download_fasta.jsp⁠

• Backend databases of KO and all supported species. KOBAS Backend databases download website: http://kobas.cbi.pku.edu.cn/site/download_db.jsp⁠

  • Download the KOBAS organism data package (organism.db.gz) from KOBAS Backend databases download website
  • Download the KOBAS specific species data package from KOBAS Backend databases download website (for example, hsa.db.gz)
  • Download the specific sequence file from KOBAS sequence files download website (for example, hsa.pep.fasta.gz)
  • gunzip organism.db.gz
  • gunzip hsa.db.gz
  • Move all databases into ${kobas_home}/sqlite3/ (for example, organism.db, hsa.db)
  • gunzip hsa.pep.fasta.gz
  • Move the fasta sequence file into ${kobas_home}/seq_pep/
  • makeblastdb -in hsa.pep.fasta -dbtype prot