loopbackkr/freesurfer repository overview

⁠Freesurfer: Freeview

⁠Run

docker-compose run --rm freeview docker-compose run --rm --build --name <TASK_NAME> mri_synthstrip

⁠Troubleshooting

Start the X Window server using "One large window" mode, instead of "Multiple window" mode. Alternatively, try Multiple window mode but disable the "Native opengl" option. Otherwise, there will be error like:

The program 'fsleyes' received an X Window System error.

This probably reflects a bug in the program.

The error was 'GLXBadContext'.

Ref: https://sites.google.com/site/chuanglab/tips-tricks#h.p_ID_236⁠