lpantano/bcbiosinglecell repository overview

functional image to run QC reports in single cell data at HBC (harvard chan school).

In macs, setup memory RAM limit to 4G or more. This is done with the docker main application. Preference -> Advance.

To start the image with root permissions to install missing packages:

docker run -d -p 8787:8787 -e ROOT=TRUE -v $(pwd):/home/rstudio lpantano/bcbiosinglecell

Connect to rstudio: localhost:8787 with user and password: rstudio/rstudio

You can install R packages as usual, and system packages with System("sudo apt-get install pacakge_name").

If you need to access the console:

docker exec -ti <CONTAINER_ID> bash